Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61019208_61026966_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61019208 - 61026966

Intron Length:

7759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTCC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTGTTTTCAACA

Flanking Amino Acid:

TGYLEELEKERSLLLAELEK

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.2

30.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

0.61

0.9

73.4

35.9

Minor 5ss

40.8

-1

2.8

53.7

43.5

Minor BPS

59.1

0.28

1.6

66.45

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047575

61000881 - 61060864

59984

ENSAPLT00000001777

61000881 - 61061186

60306