Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61045153_61047709_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61045153 - 61047709

Intron Length:

2557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGAA

5'SS Class:

major

3'SS Sequence:

ATTTGACCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTTTTTAAAA

Flanking Amino Acid:

RRLTSHLGTKVEMVYSLLSM

Intron Amino Acid Position:

312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.2

68.5

38.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

75.3

0.57

0.9

67.6

38.6

Minor 5ss

41.2

-1

3.3

55.3

48.9

Minor BPS

71.8

0.68

1.3

77.35

32.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047575

61000881 - 61060864

59984

ENSAPLT00000034779

61000881 - 61061186

60306

ENSAPLT00000001777

61000881 - 61061186

60306