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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61072038_61073086_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61072038 - 61073086
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAATTAAAACT
Flanking Amino Acid:
AAAASPSDKERFICIYPAYL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.3
41.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
29.6
-2.3
3.4
39
46.3
Minor BPS
47.6
-0.1
1.9
69.89
41

Associated Gene:

Gene:
SRP19
Ensembl Gene ID:
ENSAPLG00000002624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002649
61071670 - 61076295
4626