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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61084923_61085967_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61084923 - 61085967
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAAGTTTTAACT
Flanking Amino Acid:
AETADTIAKEAKKATVNLLG
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.5
0.89
0.7
84.5
30.1
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
67.5
0.63
1.3
77.26
39.3

Associated Gene:

Gene:
REEP5
Ensembl Gene ID:
ENSAPLG00000002639
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036139
61084873 - 61105812
20940
ENSAPLT00000019223
61084873 - 61106118
21246
ENSAPLT00000002669
61084873 - 61106118
21246