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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61086137_61091568_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61086137 - 61091568
Intron Length:
5432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTCTCTTCCACT
Flanking Amino Acid:
SWFPFYYMLKCGFLLWCMAP
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.4
0.71
0.8
74.6
36.4
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
51.7
0.13
2
72.55
44.5

Associated Gene:

Gene:
REEP5
Ensembl Gene ID:
ENSAPLG00000002639
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036139
61084873 - 61105812
20940
ENSAPLT00000019223
61084873 - 61106118
21246
ENSAPLT00000002669
61084873 - 61106118
21246