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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61091708_61105367_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61091708 - 61105367
Intron Length:
13660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTACTTACCT
Flanking Amino Acid:
LSSLKAMPTAWIKAIESPNK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
74.1
34.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
90.2
0.9
0.6
84.6
23.3
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
68.9
0.67
1.8
87.6
37.5

Associated Gene:

Gene:
REEP5
Ensembl Gene ID:
ENSAPLG00000002639
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019223
61084873 - 61106118
21246