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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61093949_61105569_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61093949 - 61105569
Intron Length:
11621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTATTTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TATTTCTTCAAG
Flanking Amino Acid:
HRLRIPRIRLILLQVLRIRS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
62
37
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.1
0.61
1
76.1
38
Minor 5ss
30
-2.3
3.1
36.6
34.4
Minor BPS
55.2
0.02
2
65.42
42.2

Associated Gene:

Gene:
REEP5
Ensembl Gene ID:
ENSAPLG00000002639
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036139
61084873 - 61105812
20940