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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61105425_61105569_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61105425 - 61105569
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
GTCTGCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
TGCCCCAAAACC
Flanking Amino Acid:
IIGFGYPAYVSCCVMGWQVL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
62
37
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
63.9
0.31
1
58.4
38.4
Minor 5ss
30
-2.3
3.1
36.6
34.4
Minor BPS
48.5
-0.1
2
61.86
43.1

Associated Gene:

Gene:
REEP5
Ensembl Gene ID:
ENSAPLG00000002639
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019223
61084873 - 61106118
21246