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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61131011_61132617_F

Intron Information:

Intron Rank:
1
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
61131011 - 61132617
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CTG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTGCTGCTGTAC|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TACCCAA
U12 Branch Point Sequence:
GCTTCCTTGACT
Flanking Amino Acid:
QCGIRDFAKAVFNHCPFLLP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35.4
-0.9
3.4
55
44.6
Major BPS
55.3
0.13
1.2
64.7
33.6
Major PPT
38.3
-0.6
3.1
50.9
38.7
Minor 5ss
99
1.63
0.6
96.7
10.2
Minor BPS
82.4
1.1
1.1
88.2
37

Associated Gene:

Gene:
DCP2
Ensembl Gene ID:
ENSAPLG00000013540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014126
61130752 - 61141041
10290