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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61135873_61136671_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61135873 - 61136671
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTCATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTGATT
Flanking Amino Acid:
FNPKTRREIRNIEWFSIDKL
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
76.9
37.2
Minor 5ss
45.2
-0.5
2.5
48.8
47.3
Minor BPS
68.2
0.65
1.2
82.69
32.4

Associated Gene:

Gene:
DCP2
Ensembl Gene ID:
ENSAPLG00000013540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014126
61130752 - 61141041
10290