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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61137001_61137591_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61137001 - 61137591
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTTAACC
Flanking Amino Acid:
TPAKPNSEKARSKPRSSQQV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
100
1.24
0.5
100
0
Major PPT
69.4
0.44
1
63.1
42.6
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
DCP2
Ensembl Gene ID:
ENSAPLG00000013540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014126
61130752 - 61141041
10290