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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61152006_61161955_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61152006 - 61161955
Intron Length:
9950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTCCTGATCC
Flanking Amino Acid:
LTAELTNALRREKKLKARVQ
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.5
39.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.6
0.53
1
65.4
40.2
Minor 5ss
44.4
-0.6
2.9
62
42.6
Minor BPS
63.8
0.41
1.8
75.27
41.2

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046090
61147186 - 61298770
151585
ENSAPLT00000014280
61150623 - 61220512
69890
ENSAPLT00000030257
61150623 - 61323860
173238
ENSAPLT00000029941
61150623 - 61342658
192036
ENSAPLT00000024224
61147186 - 61245910
98725