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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61162054_61162985_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61162054 - 61162985
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGAGT
5'SS Class:
major
3'SS Sequence:
CCTCACTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTTGCCTCACTT
Flanking Amino Acid:
SSGSKDKLGKECSDGTATPL
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.4
43.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
75.5
0.57
0.8
72.2
32
Minor 5ss
29.4
-2.4
3.1
40.7
45.2
Minor BPS
50.2
0.08
2
71.5
46

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024224
61147186 - 61245910
98725
ENSAPLT00000014280
61150623 - 61220512
69890
ENSAPLT00000046090
61147186 - 61298770
151585
ENSAPLT00000030257
61150623 - 61323860
173238
ENSAPLT00000029941
61150623 - 61342658
192036