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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61180682_61182471_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61180682 - 61182471
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCTTTTCAACA
Flanking Amino Acid:
EFEVETERLNSRIEHLKSQN
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.8
0.67
0.8
76.7
30.6
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
59.7
0.3
1.5
66.33
40.9

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030257
61150623 - 61323860
173238
ENSAPLT00000029941
61150623 - 61342658
192036
ENSAPLT00000024224
61147186 - 61245910
98725
ENSAPLT00000014280
61150623 - 61220512
69890
ENSAPLT00000046090
61147186 - 61298770
151585