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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61183834_61193897_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61183834 - 61193897
Intron Length:
10064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGTTTTATCC
Flanking Amino Acid:
REERDRLRRRVRELQTRLQS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69
41.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.3
0.59
0.8
74.7
35.2
Minor 5ss
34.2
-1.8
3.2
41.7
44.2
Minor BPS
55.7
0.16
1.7
66.44
39.7

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014280
61150623 - 61220512
69890
ENSAPLT00000046090
61147186 - 61298770
151585
ENSAPLT00000030257
61150623 - 61323860
173238
ENSAPLT00000029941
61150623 - 61342658
192036
ENSAPLT00000024224
61147186 - 61245910
98725