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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61210745_61217682_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61210745 - 61217682
Intron Length:
6938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ACTCATAAGACC
Flanking Amino Acid:
LLEKKLAKAQCEQSHLMREH
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.7
0.65
0.8
77.4
31.4
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
39.3
-0.8
1.9
47.07
35.9

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029941
61150623 - 61342658
192036
ENSAPLT00000024224
61147186 - 61245910
98725
ENSAPLT00000014280
61150623 - 61220512
69890
ENSAPLT00000046090
61147186 - 61298770
151585
ENSAPLT00000030257
61150623 - 61323860
173238