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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61217797_61220509_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61217797 - 61220509
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ACTTGGTTAATT
Flanking Amino Acid:
MLHLAALASLK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
50.2
0.08
2.4
73.58
44

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014280
61150623 - 61220512
69890