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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61217797_61298713_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61217797 - 61298713
Intron Length:
80917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ACTTGGTTAATT
Flanking Amino Acid:
GNDSPAELSELHLAALASLK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
50.2
0.08
2.4
73.58
44

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046090
61147186 - 61298770
151585