Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6124_6277_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6124 - 6277

Intron Length:

154

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCACCA

5'SS Class:

major

3'SS Sequence:

TCATCCCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TCATCCCTTACA

Flanking Amino Acid:

QSNVLEKEFKAVQNFSELFQ

Intron Amino Acid Position:

666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.2

56.4

42.8

Major BPS

71.6

0.54

33.1

Major PPT

79.5

0.66

0.8

72.7

31.9

Minor 5ss

36.7

-1.5

3.2

49.5

46.2

Minor BPS

55.6

0.17

69.17

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005719

2781 - 13437

10657