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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61323874_61342524_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
61323874 - 61342524
Intron Length:
18651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
AAAATATCCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTCCCTCTAAAA
Flanking Amino Acid:
CDGDGDGFISRNDLLMVCRQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
57
0.16
1
52.7
41.7
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
52.6
0.08
1.8
66.85
39.3

Associated Gene:

Gene:
MCC
Ensembl Gene ID:
ENSAPLG00000013663
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029941
61150623 - 61342658
192036