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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61357476_61360106_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61357476 - 61360106
Intron Length:
2631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATTCCTATTT
Flanking Amino Acid:
QSLGLVSKSRGKGSNRYLTV
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
84.3
0.77
0.7
77
31.7
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
54.3
0.21
1.9
77.09
39.6

Associated Gene:

Gene:
YTHDC2
Ensembl Gene ID:
ENSAPLG00000013814
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014411
61357092 - 61383498
26407