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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61373809_61373894_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61373809 - 61373894
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGATCCTTAAAA
Flanking Amino Acid:
DDKRFADNAHRYQVFMLHSN
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
0.9
70.8
39.5
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
71.8
0.68
1.4
73.51
37.2

Associated Gene:

Gene:
YTHDC2
Ensembl Gene ID:
ENSAPLG00000013814
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027592
61357092 - 61383498
26407
ENSAPLT00000014411
61357092 - 61383498
26407