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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61374146_61374983_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61374146 - 61374983
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCGATTTTATTT
Flanking Amino Acid:
FVIDSGKMKEKSFDALSCVT
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
49.4
0.04
1.6
63.14
42.3

Associated Gene:

Gene:
YTHDC2
Ensembl Gene ID:
ENSAPLG00000013814
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014411
61357092 - 61383498
26407
ENSAPLT00000027592
61357092 - 61383498
26407