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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61375067_61376139_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61375067 - 61376139
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATTATTAACA
Flanking Amino Acid:
SKASAIQRKGRAGRCRPGVC
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.5
0.69
1
79.5
37.9
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
67.4
0.54
1.5
74.71
35.9

Associated Gene:

Gene:
YTHDC2
Ensembl Gene ID:
ENSAPLG00000013814
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014411
61357092 - 61383498
26407
ENSAPLT00000027592
61357092 - 61383498
26407