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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61405497_61405922_F

Intron Information:

Intron Rank:
128365
Intron Class:
major
Intron Phase:
Intron Coordinates:
61405497 - 61405922
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTGATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
1
74.5
40.2
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
47.8
-0
2
68.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019140
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046594
61404783 - 61412304
7522