About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61420562_61422540_F

Intron Information:

Intron Rank:
135534
Intron Class:
major
Intron Phase:
Intron Coordinates:
61420562 - 61422540
Intron Length:
1979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTTTCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75
0.56
0.9
65.9
40.3
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
45.7
-0.2
2
69.22
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022929
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024534
61420312 - 61427751
7440