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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61422597_61426827_F

Intron Information:

Intron Rank:
135535
Intron Class:
major
Intron Phase:
Intron Coordinates:
61422597 - 61426827
Intron Length:
4231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
55.1
0.24
1.9
75.53
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022929
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024534
61420312 - 61427751
7440