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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61453548_61456724_F

Intron Information:

Intron Rank:
150708
Intron Class:
major
Intron Phase:
Intron Coordinates:
61453548 - 61456724
Intron Length:
3177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TAAGCCTTATAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
81.3
0.7
0.8
81.3
30.7
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
52.1
0.06
1.8
62.96
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030963
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034168
61451839 - 61456913
5075