About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61453548_61461150_F

Intron Information:

Intron Rank:
150706
Intron Class:
major
Intron Phase:
Intron Coordinates:
61453548 - 61461150
Intron Length:
7603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66.2
0.37
1.7
78
36.1
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
68.3
0.65
1.5
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030963
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027272
61451839 - 61461160
9322