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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61511684_61598188_F

Intron Information:

Intron Rank:
134491
Intron Class:
major
Intron Phase:
Intron Coordinates:
61511684 - 61598188
Intron Length:
86505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TCCCCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TACACAGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
76.7
0.6
0.7
71.3
26.8
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
45.5
-0.2
2.3
66.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022289
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033150
61508869 - 61598279
89411