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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61660713_61679523_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61660713 - 61679523
Intron Length:
18811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAACCTTATAT
Flanking Amino Acid:
IIVYHAREIQLFMVDNGADD
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.8
0.85
0.8
85.9
33.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
61.7
0.44
1.8
79.46
41.8

Associated Gene:

Gene:
KCNN2
Ensembl Gene ID:
ENSAPLG00000013890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044045
61659092 - 61732398
73307
ENSAPLT00000029283
61659092 - 61732398
73307
ENSAPLT00000014474
61659092 - 61732398
73307
ENSAPLT00000047522
61659092 - 61732398
73307