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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61679943_61707584_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61679943 - 61707584
Intron Length:
27642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATGGTAAAGT
Flanking Amino Acid:
IAAWTVRACERYHDQQDVTS
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
39.3
-0.7
2.7
59.67
49.5

Associated Gene:

Gene:
KCNN2
Ensembl Gene ID:
ENSAPLG00000013890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047522
61659092 - 61732398
73307
ENSAPLT00000044045
61659092 - 61732398
73307
ENSAPLT00000029283
61659092 - 61732398
73307
ENSAPLT00000014474
61659092 - 61732398
73307