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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61707727_61722160_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61707727 - 61722160
Intron Length:
14434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTGTTTTATT
Flanking Amino Acid:
KGVCLLTGIMGAGCTALVVA
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.8
84.8
35.6
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
53.3
0.19
2
76.14
40.9

Associated Gene:

Gene:
KCNN2
Ensembl Gene ID:
ENSAPLG00000013890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044045
61659092 - 61732398
73307