About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61720372_61722160_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61720372 - 61722160
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTATTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTGTTTTATT
Flanking Amino Acid:
LKKSCLFSEEGAGCTALVVA
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.8
84.8
35.6
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
53.3
0.19
2
76.14
40.9

Associated Gene:

Gene:
KCNN2
Ensembl Gene ID:
ENSAPLG00000013890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029283
61659092 - 61732398
73307
ENSAPLT00000014474
61659092 - 61732398
73307