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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_61818476_61820124_R

Intron Information:

Intron Rank:
145734
Intron Class:
major
Intron Phase:
Intron Coordinates:
61818476 - 61820124
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.5
0.69
1
77.1
41.6
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
59.2
0.28
1.7
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025802
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023266
61796664 - 61820253
23590