Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62372341_62372613_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62372341 - 62372613

Intron Length:

273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGTAC

5'SS Class:

major

3'SS Sequence:

TTCTTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAC

U12 Branch Point Sequence:

ATTACTGTAACA

Flanking Amino Acid:

YSFWVGATLKLLNIFQYTNF

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

62.9

38.4

Major BPS

0.4

1.1

57.8

38.6

Major PPT

93.1

0.97

0.6

18.6

Minor 5ss

35.7

-1.6

3.5

49.3

47.3

Minor BPS

0.28

74.33

37.3

Associated Gene:

Gene:

PGGT1B

Ensembl Gene ID:

ENSAPLG00000012581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032288

62371527 - 62405106

33580

ENSAPLT00000013145

62371527 - 62404091

32565