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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62398001_62403717_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62398001 - 62403717
Intron Length:
5717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCAGG
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAAGTCTTATCT
Flanking Amino Acid:
AAPPPLHLPRRLTIAFFALS
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
63.8
47.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
37.7
-1.4
3.1
48.9
46.9
Minor BPS
58.4
0.34
1.7
73.52
43.2

Associated Gene:

Gene:
PGGT1B
Ensembl Gene ID:
ENSAPLG00000012581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032288
62371527 - 62405106
33580