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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62494771_62504317_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62494771 - 62504317
Intron Length:
9547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTCTTACTA
Flanking Amino Acid:
GADVNRKSVKGNTALHDCAE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
68.9
43.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.6
0.67
0.8
74.7
34.8
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
65.2
0.47
1.6
76.1
35.4

Associated Gene:

Gene:
FEM1C
Ensembl Gene ID:
ENSAPLG00000012870
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013390
62493461 - 62505012
11552