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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62525033_62525137_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62525033 - 62525137
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTGCCAGTGACC
Flanking Amino Acid:
YNGRWGGSGQVVTTYCPANN
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
77.3
0.61
0.8
69.8
36.7
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
44.5
-0.4
2.2
57.34
41.3

Associated Gene:

Gene:
ALDH7A1
Ensembl Gene ID:
ENSAPLG00000012964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013553
62524859 - 62541018
16160