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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62525528_62527203_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62525528 - 62527203
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
AKEAWKVWADIPAPKRGEIV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.9
0.81
0.8
82.3
34.1
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
ALDH7A1
Ensembl Gene ID:
ENSAPLG00000012964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013553
62524859 - 62541018
16160