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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62530979_62531569_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62530979 - 62531569
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GCATATTTAAAT
Flanking Amino Acid:
IAMICGNACLWKGAPTTSLI
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.6
81.8
23
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
55.4
0.25
1.6
67.97
42.3

Associated Gene:

Gene:
ALDH7A1
Ensembl Gene ID:
ENSAPLG00000012964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013553
62524859 - 62541018
16160