About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62538293_62538737_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62538293 - 62538737
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGCTTCTTTATA
Flanking Amino Acid:
APILYVLKFKEEEEVFAWNN
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
81.2
0.7
0.8
76.3
32.5
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
59.5
0.29
1.6
67.07
39.5

Associated Gene:

Gene:
ALDH7A1
Ensembl Gene ID:
ENSAPLG00000012964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013553
62524859 - 62541018
16160