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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62538836_62538999_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62538836 - 62538999
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATAATTA
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTCTTTTCATA
Flanking Amino Acid:
KDLGRIFRWLGPKGSDCGIV
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.1
63.7
37.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
82.8
0.74
0.7
79.4
26.2
Minor 5ss
46.5
-0.4
2.9
55.5
48.7
Minor BPS
50.8
0.02
1.7
63.33
38

Associated Gene:

Gene:
ALDH7A1
Ensembl Gene ID:
ENSAPLG00000012964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013553
62524859 - 62541018
16160