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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62567585_62568052_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62567585 - 62568052
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTACCTTATTT
Flanking Amino Acid:
LNHILIFYAVLVCVLIFSTF
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
66.9
0.61
1.6
81.7
39.8

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036636
62560911 - 62592396
31486
ENSAPLT00000026874
62561777 - 62602032
40256
ENSAPLT00000021208
62561650 - 62602032
40383
ENSAPLT00000013901
62560911 - 62602032
41122