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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62568402_62570016_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62568402 - 62570016
Intron Length:
1615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATTCAAAATC
Flanking Amino Acid:
SQTPELECFQDYHVVETQTH
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
78.4
0.64
1
75.8
38.2
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
51.1
0.01
1.9
67.54
38.3

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036636
62560911 - 62592396
31486
ENSAPLT00000026874
62561777 - 62602032
40256
ENSAPLT00000021208
62561650 - 62602032
40383
ENSAPLT00000013901
62560911 - 62602032
41122