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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62571080_62572092_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62571080 - 62572092
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCTCAAACA
Flanking Amino Acid:
ALIIATVTDRYMFVSLLSRD
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
61.1
0.35
2
79.78
36.5

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026874
62561777 - 62602032
40256
ENSAPLT00000021208
62561650 - 62602032
40383
ENSAPLT00000013901
62560911 - 62602032
41122
ENSAPLT00000036636
62560911 - 62592396
31486