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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62576152_62576901_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62576152 - 62576901
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
GCTACCTTAAAT
Flanking Amino Acid:
DVPIDEPLKQSFTCALQKEI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
78.9
0.65
0.9
76.9
37.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
69.7
0.7
1.5
79.19
42.2

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013901
62560911 - 62602032
41122
ENSAPLT00000036636
62560911 - 62592396
31486
ENSAPLT00000026874
62561777 - 62602032
40256
ENSAPLT00000021208
62561650 - 62602032
40383