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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62577351_62579719_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62577351 - 62579719
Intron Length:
2369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GGTATCTCACGT
Flanking Amino Acid:
IDDRKKVDVARTKSSSDSPV
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
42.6
-0.4
2
58.1
44.5

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036636
62560911 - 62592396
31486
ENSAPLT00000026874
62561777 - 62602032
40256
ENSAPLT00000021208
62561650 - 62602032
40383
ENSAPLT00000013901
62560911 - 62602032
41122