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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62579843_62591678_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62579843 - 62591678
Intron Length:
11836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCCCCTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
GRRECRGALRLSDGENGTDE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
61.1
0.28
1
67
29.8
Major PPT
78.6
0.64
0.7
72.5
25.6
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
GRAMD2B
Ensembl Gene ID:
ENSAPLG00000013303
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036636
62560911 - 62592396
31486