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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62685043_62685877_F

Intron Information:

Intron Rank:
149001
Intron Class:
major
Intron Phase:
Intron Coordinates:
62685043 - 62685877
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
74.5
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
39.2
-1.2
2.9
49.4
46.6
Minor BPS
61.7
0.45
1.7
81.77
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030140
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026559
62684902 - 62688859
3958